BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005C11LP1|AL425356
(855 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1046 0.0
>3x_Contig1619
Length = 7770
Score = 1046 bits (509), Expect = 0.0
Identities = 598/649 (92%), Gaps = 1/649 (0%)
Strand = Plus / Plus
Query: 208 cgcggggttataatttaawaaatwaccgcaaataawacattgtattatttgcggataatc 267
||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 5284 cgcggggttattatttaataaattaccgcaaataatacattgtattatttgcggataatc 5343
Query: 268 ttatatattatdatccacttsaaaaacgaaattttwaaaaagaattgcaagaaawawatt 327
||||||||||| |||||||| |||| |||||| | |||||||||||||||| | |||
Sbjct: 5344 ttatatattattatccactttcgtaacgtaatttttataaagaattgcaagaaatatatt 5403
Query: 328 awattcttattataawattawatktkkgrkacttataatgggacttgaacctatatactt 387
| ||||||||||||| |||| || | ||||||||||||||||||||||||||||||
Sbjct: 5404 atattcttattataatattatatttttaatacttataatgggacttgaacctatatactt 5463
Query: 388 cgcttatgagacgaatgttttaaccaattaaactatacaagttattatatannnatanaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 5464 cgcttatgagacgaatgttttaaccaattaaactatacaagttattatatatttatataa 5523
Query: 448 nagnanaaraggaccnaatatttatbaagtaattkcccgcggtcaccwcccttcgggggg 507
|| | || | ||| ||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 5524 tagtataaaattacctaatatttattaagtaatttcccgcggtcacctcccttcgggggg 5583
Query: 508 kgccgcgggtagatattaatttatataagccccaaatgcatcatccctatgaggatgtcg 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 tgccgcgggtagatattaatttatataagccccaaatgcatcatccctatgaggatgtcg 5643
Query: 568 catttggggcaaagggtgaatactgagaattgaactcagatttaacgcgccacaagcatt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 catttggggcaaagggtgaatactgagaattgaactcagatttaacgcgccacaagcatt 5703
Query: 628 ctttctacctttgaaatatattcacctataattatatathannbtwtagahawwtgamcg 687
||||||||||||||||||||||||||||||||||||||| | | |||| | ||| ||
Sbjct: 5704 ctttctacctttgaaatatattcacctataattatatataaaaatatagaaaaatgaacg 5763
Query: 688 gaaaatatgagagkcgaactcataagracatagttcaattatgtagcaaataatctacct 747
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5764 gaaaatatgagagtcgaactcataagaacatagttcaattatgtagcaaataatctacct 5823
Query: 748 taccaatagtgaa-tttcctattacgaatctaatcagacttgcactgacatcaaccatcg 806
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 taccaatagtgaattttcctattacgaatctaatcagacttgcactgacatcaaccatcg 5883
Query: 807 tgacaagatgggactttactattaagctacagatccattawataatttt 855
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5884 tgacaagatgggactttactattaagctacagatccattatataatttt 5932
Score = 230 bits (112), Expect = 3e-60
Identities = 144/158 (91%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 1 tttttctaaaatattattatgtatatagtgggaatatatatattattattatattatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 tttttctaaaatattattatgtatatagtgggaatatatatattattattatattatata 5137
Query: 61 ttacatatatatatataatatattawawkccccgsggcacctaaamcggrgdawaccgnt 120
||||||||||||||||||||||||| | ||||| |||||||| | ||| | | |||| |
Sbjct: 5138 ttacatatatatatataatatattatattccccgcggcacctataccggtgtataccggt 5197
Query: 121 gatataccgagntaggagaccgcgggbgggggggaaac 158
| ||||||| | |||||||||||||| |||||||||||
Sbjct: 5198 g-tataccg-ggtaggagaccgcgggggggggggaaac 5233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.35
Gapped
Lambda K H
1.42 0.717 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8927
Number of Sequences: 1807
Number of extensions: 8927
Number of successful extensions: 532
Number of sequences better than 1.0e-20: 1
length of query: 855
length of database: 10,358,551
effective HSP length: 16
effective length of query: 839
effective length of database: 10,329,639
effective search space: 8666567121
effective search space used: 8666567121
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 49 (101.2 bits)